Publications in collaboration with researchers from Universidade Do Porto (14)

2020

  1. Ptml multi-label algorithms: Models, software, and applications

    Current Topics in Medicinal Chemistry, Vol. 20, Núm. 25, pp. 2326-2337

2019

  1. PTML Model of Enzyme Subclasses for Mining the Proteome of Biofuel Producing Microorganisms

    Journal of Proteome Research, Vol. 18, Núm. 7, pp. 2735-2746

2015

  1. Solvent accessible surface area-based hot-spot detection methods for protein-protein and protein-nucleic acid interfaces

    Journal of Chemical Information and Modeling, Vol. 55, Núm. 5, pp. 1077-1086

2013

  1. Evolutionary computation and QSAR research

    Current Computer-Aided Drug Design, Vol. 9, Núm. 2, pp. 206-225

  2. S2SNET: A tool for transforming characters and numeric sequences into star network topological indices in chemoinformatics, bioinformatics, biomedical, and social-legal sciences

    Current Bioinformatics, Vol. 8, Núm. 4, pp. 429-437

2012

  1. QSAR, Complex Networks, Principal Components and Partial Order Analysis of Drug Cardiotoxicity with Proteome Mass-Spectra Topological Indices

    RECENT TRENDS ON QSAR IN THE PHARMACEUTICAL PERCEPTIONS (BENTHAM SCIENCE PUBL), pp. 3-50

  2. QSAR, complex networks, principal components and partial order analysis of drug cardiotoxicity with proteome mass-spectra topological indices

    Recent Trends on QSAR in the Pharmaeutical Perceptions (Bentham Science Publishers Ltd.), pp. 3-50

2011

  1. Amino acid pair- and triplet-wise groupings in the interior of α-helical segments in proteins

    Journal of Theoretical Biology, Vol. 271, Núm. 1, pp. 136-144

2009

  1. Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices

    Journal of Theoretical Biology, Vol. 256, Núm. 3, pp. 458-466

  2. Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices

    Journal of Theoretical Biology, Vol. 257, Núm. 2, pp. 303-311

  3. Prot-2S: A new python web tool for protein secondary structure studies

    International Journal of Bioinformatics Research and Applications, Vol. 5, Núm. 4, pp. 402-416

  4. QSAR and complex network study of the chiral HMGR inhibitor structural diversity

    Bioorganic and Medicinal Chemistry, Vol. 17, Núm. 1, pp. 165-175

2008

  1. Enzymes/non-enzymes classification model complexity based on composition, sequence, 3D and topological indices

    Journal of Theoretical Biology, Vol. 254, Núm. 2, pp. 476-482

  2. Natural/random protein classification models based on star network topological indices

    Journal of Theoretical Biology, Vol. 254, Núm. 4, pp. 775-783