Publications by the researcher in collaboration with Miguel Arenas Busto (17)

2022

  1. Joint analysis of species and genetic variation to quantify the role of dispersal and environmental constraints in community turnover

    Ecography, Vol. 2022, Núm. 5

2015

  1. CodABC: A computational framework to coestimate recombination, substitution, and molecular adaptation rates by approximate bayesian computation

    Molecular Biology and Evolution, Vol. 32, Núm. 4, pp. 1109-1112

2014

  1. Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation

    Heredity, Vol. 112, Núm. 3, pp. 255-264

  2. Simulation of genome-wide evolution under heterogeneous substitution models and complex multispecies coalescent histories

    Molecular Biology and Evolution, Vol. 31, Núm. 5, pp. 1295-1301

  3. The influence of recombination on the estimation of selection from coding sequence alignments

    Natural Selection: Methods and Applications (CRC Press), pp. 112-125

2013

  1. Protein evolution along phylogenetic histories under structurally constrained substitution models

    Bioinformatics, Vol. 29, Núm. 23, pp. 3020-3028

2012

  1. Simulation of coding sequence evolution

    Codon Evolution: Mechanisms and Models (Oxford University Press)

2011

  1. Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand

    PLoS ONE, Vol. 6, Núm. 3

2010

  1. Characterization of phylogenetic networks with NetTest

    BMC Bioinformatics, Vol. 11

  2. Coalescent simulation of intracodon recombination

    Genetics, Vol. 184, Núm. 2, pp. 429-437

  3. Computational design of centralized HIV-1 genes

    Current HIV Research, Vol. 8, Núm. 8, pp. 613-621

  4. The effect of recombination on the reconstruction of ancestral sequences

    Genetics, Vol. 184, Núm. 4, pp. 1133-1139

2009

  1. Characterization of reticulate networks based on the coalescent with recombination (Molecular Biology and Evolution (2008) 25, (2517-2520) DOI: 10.1093/molbev/msn219)

    Molecular Biology and Evolution

  2. Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

    Retrovirology, Vol. 6

2008

  1. Characterization of reticulate networks based on the coalescent with recombination

    Molecular Biology and Evolution, Vol. 25, Núm. 12, pp. 2517-2520

2007

  1. Nuevo software para la simulación de secuencias de ADN mediante coalescencia con recombinación, migración, demografía y modelos de codones

    SEG 2007: libro de resúmenes

  2. Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography

    BMC Bioinformatics, Vol. 8