Publications in collaboration with researchers from Brigham Young University (37)

2015

  1. Nested clade phylogeographic analysis for conservation genetics

    Population Genetics for Animal Conservation (Cambridge University Press), pp. 80-103

2011

  1. HIV-1 infected monozygotic twins: A tale of two outcomes

    BMC Evolutionary Biology, Vol. 11, Núm. 1

  2. Phylodynamics of HIV-1 from a phase III AIDS vaccine trial in Bangkok, Thailand

    PLoS ONE, Vol. 6, Núm. 3

2010

  1. Phylodynamics of HIV-1 from a phase-III AIDS vaccine trial in North America

    Molecular Biology and Evolution, Vol. 27, Núm. 2, pp. 417-425

2009

  1. Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

    Retrovirology, Vol. 6

2008

  1. A comparison of phylogenetic network methods using computer simulation

    PLoS ONE, Vol. 3, Núm. 4

  2. Disease progression and evolution of the HIV-1 env gene in 24 infected infants

    Infection, Genetics and Evolution, Vol. 8, Núm. 2, pp. 110-120

2007

  1. Lack of temporal structure in the short term HIV-1 evolution within asymptomatic naïve patients

    Virology, Vol. 362, Núm. 2, pp. 294-303

  2. Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy

    Infection, Genetics and Evolution, Vol. 7, Núm. 4, pp. 476-483

2006

  1. Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a phase 3 HIV vaccine efficacy trial

    AIDS Research and Human Retroviruses, Vol. 22, Núm. 10, pp. 968-978

  2. Nested clade analysis statistics

    Molecular Ecology Notes, Vol. 6, Núm. 3, pp. 590-593

  3. On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy

    Infection, Genetics and Evolution, Vol. 6, Núm. 2, pp. 91-96

  4. Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method

    Molecular Biology and Evolution, Vol. 23, Núm. 4, pp. 817-827

2005

  1. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints

    AIDS Research and Human Retroviruses, Vol. 21, Núm. 1, pp. 98-102

2004

  1. Phylogeography and speciation of colour morphs in the colonial ascidian Pseudodistoma crucigaster

    Molecular Ecology, Vol. 13, Núm. 10, pp. 3125-3136

  2. The causes and consequences of HIV evolution

    Nature Reviews Genetics, Vol. 5, Núm. 1, pp. 52-61

2003

  1. Evidence for survival of Pleistocene climatic changes in Northern refugia by the land snail Trochoidea geyeri (Soós 1926) (Helicellinae, Stylommatophora)

    BMC Evolutionary Biology, Vol. 3

2002

  1. Evaluation of methods for detecting recombination from DNA sequences: Empirical data

    Molecular Biology and Evolution, Vol. 19, Núm. 5, pp. 708-717

  2. Phylogeographic history of the land snail Candidula unifasciata (Helicellinae, Stylommatophora): Fragmentation, corridor migration, and secondary contact

    Evolution, Vol. 56, Núm. 9, pp. 1776-1788

  3. Recombination in evolutionary genomics

    Annual Review of Genetics, Vol. 36, pp. 75-97