Publications in collaboration with researchers from Universidade de Vigo (160)

2024

  1. Crykey: Rapid identification of SARS-CoV-2 cryptic mutations in wastewater

    Nature Communications, Vol. 15, Núm. 1

  2. Dispersal history of SARS-CoV-2 in Galicia, Spain

    Journal of Medical Virology, Vol. 96, Núm. 7

2023

  1. Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta

    Microbiology spectrum, Vol. 11, Núm. 6, pp. e0153923

  2. Exploring the Solution Space of Cancer Evolution Inference Frameworks for Single-Cell Sequencing Data

    Communications in Computer and Information Science

  3. Single-cell phylogenies reveal changes in the evolutionary rate within cancer and healthy tissues

    Cell Genomics, Vol. 3, Núm. 9

  4. Somatic evolution of marine transmissible leukemias in the common cockle, Cerastoderma edule

    Nature Cancer, Vol. 4, Núm. 11, pp. 1575-1591

  5. Transcriptomic landscape of the kleptoplastic sea slug Elysia viridis

    Journal of Molluscan Studies, Vol. 89, Núm. 1

  6. Wastewater early warning system for SARS-CoV-2 outbreaks and variants in a Coruña, Spain

    Environmental Science and Pollution Research, Vol. 30, Núm. 32, pp. 79315-79334

2022

  1. CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data

    Genome Biology, Vol. 23, Núm. 1

  2. Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing

    Cancer Letters, Vol. 543

  3. Comparative analysis of capture methods for genomic profiling of circulating tumor cells in colorectal cancer

    Genomics, Vol. 114, Núm. 6

  4. Joint analysis of species and genetic variation to quantify the role of dispersal and environmental constraints in community turnover

    Ecography, Vol. 2022, Núm. 5

  5. Limited genomic reconstruction of SARS-CoV-2 transmission history within local epidemiological clusters

    Virus Evolution, Vol. 8, Núm. 1

  6. Mitochondrial genome sequencing of marine leukaemias reveals cancer contagion between clam species in the Seas of Southern Europe

    eLife, Vol. 11

  7. Phylogenomic Analyses of 2,786 Genes in 158 Lineages Support a Root of the Eukaryotic Tree of Life between Opisthokonts and All Other Lineages

    Genome biology and evolution, Vol. 14, Núm. 8

  8. Phylovar: toward scalable phylogeny-aware inference of single-nucleotide variations from single-cell DNA sequencing data

    Bioinformatics (Oxford, England), Vol. 38, Núm. 1, pp. i195-i202

  9. SARS-CoV-2 Evolution and Spike-Specific CD4+ T-Cell Response in Persistent COVID-19 with Severe HIV Immune Suppression

    Microorganisms, Vol. 10, Núm. 1

  10. SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data

    Genome Biology, Vol. 23, Núm. 1

  11. Single-cell mtDNA heteroplasmy in colorectal cancer

    Genomics, Vol. 114, Núm. 2

  12. Somatic variant calling from single-cell DNA sequencing data

    Computational and Structural Biotechnology Journal, Vol. 20, pp. 2978-2985